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Chlorophyll pigment concentrations in water bodies

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    The dataset comprises chlorophyll-a concentrations from water samples taken during RRS James Clark Ross cruise JR304, from 15/11/2014 - 17/12/2014. The cruise sailed from Punta Arenas, Chile, returning to Stanley, Falkland Islands. Samples were taken during transit to Signy Island (South Orkneys), and then up through the Scotia Sea to BAS survey sites P2 and P3 as well as near South Georgia and in the Western Core Box survey area to the north of the island of South Georgia. 112 samples were collected from the ship’s uncontaminated underway supply, with an intake at approximately 6 m depth, every two hours during transit periods. 103 samples were collected, using a rosette sampler, from the upper 1000m during CTD (conductivity, temperature and depth probe) deployments. Each 300ml sample was filtered through a 0.8μm pore size, 25mm diameter, MPF300 filter, rinsed with milliQ water, placed in an eppendorf tube and stored at -20°C for later analysis. Samples were extracted in 90 % acetone for 22-24 hours at 4°C and measured on a Trilogy Turner Designs 7200 lab fluorometer calibrated with a pure chlorophyll-a standard (Sigma, UK) and set up following the method of Welschmeyer (1994). Data have not been adjusted for blanks. The data set was from the annual Western Core Box Cruise run by British Antarctic Survey (BAS). Data were collected to support the PhD of Anna Belcher and provide seasonal context for the cruise in terms of the primary production in the surface ocean. Chlorophyll samples were taken by Jenny Thomas (BAS), Gabi Stowasser (BAS), Sophie Fielding(BAS), Vicky Peck (BAS), Jess Gardner (University of East Anglia and BAS), Cecilia Liszka (BAS), Manon Duret (National Oceanography Centre, NOC), Anna Belcher (NOC), Anna Mikis (Cardiff University) , Marianne Wootton (Sir Alistair Hardy Foundation for Ocean Science), Sebastien Floter (GEOMAR Kiel). Chlorophyll samples were analysed aboard the R.R.S. James Clark Ross by Manon Duret and Anna Belcher from NOC.

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    The dataset comprises chlorophyll-a concentrations from water samples taken during RRS James Clark Ross cruise JR291, from 12/11/2013 - 19/12/2013. The cruise sailed from Stanley, Falklands, and returned to the same port. Samples were taken during transit to Signy Island (South Orkneys), and then up through the Scotia Sea to BAS survey sites P2 and P3 as well as near South Georgia and in the Western Core Box survey area to the north of the island of South Georgia. 170 samples were collected from the ship’s uncontaminated underway supply, with an intake at approximately 6.5 m depth, every two hours during transit periods. 74 samples were collected, using a rosette sampler, from the upper 1000m during CTD (conductivity, temperature and depth probe) deployments. Each 300ml sample was filtered through a 0.8μm pore size, 25mm diameter, MPF300 filter, rinsed with Milli-Q water, placed in an Eppendorf tube and stored at -20°C for later analysis. Samples were extracted in 90 % acetone for 22-24 hours at 4°C and measured on a Trilogy Turner Designs 7200 lab fluorometer calibrated with a pure chlorophyll-a standard (Sigma, UK) and set up following the method of Welschmeyer (1994). Data have not been adjusted for blanks. The data set was from the annual Western Core Box Cruise run by British Antarctic Survey (BAS). Data were collected to support the PhD of Anna Belcher and provide seasonal context for the cruise in terms of the primary production in the surface ocean. Chlorophyll samples were collected by Elena Ceballos-Romero (University of Sevilla), Frédéric Le Moigne (NOC) and Anna Belcher (NOC). Chlorophyll samples were analysed at the National Oceanography centre in Southampton by Anna Belcher from NOC.

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    The Iodide in the ocean project brings together marine and atmospheric scientists in order to address uncertainties in the marine iodine flux and associated ozone sink. Specifically, it aims to quantify the dominant controls on the sea surface iodide distribution and improve parameterisation of the sea-to-air iodine flux and of ozone deposition. It contains data from a combination of laboratory experiments, field measurements and ocean and atmospheric modelling from three cruises as well as worldwide sea surface measurements from 1967-2018 from published manuscripts, published and unpublished data supplied by the originators themselves or provided by repositories. Iodide, iodate and total iodine concentrations were measured on three cruises: BOBBLE, June to July 2016 in the Bay of Bengal, Sagar-Kanya33 in September 2016 in the Arabian Sea and ISOE9 in January to February 2017 in the Indian and Southern Oceans. Samples were taken from Niskin bottles on conductivity-temperature-depth (CTD) profilers. Laboratory experiments consisted of phytoplankton cultures to measure rates of iodate incorporation and iodide production. This work was carried out by Lucy Carpenter (PI), Claire Hughes (Co-PI) , Liselotte Tinel, and Helmke Hepach at York University, Mark Evans (Co-PI) at the University of Edinburgh. It was funded by the NERC Discovery Science project Iodide in the ocean: distribution and impact on iodine flux and ozone loss (parent grant reference NE/N009983/1 with child grants NE/N009444/1 and NE/N01054X/1 led by Stephen Ball and David Stevens respectively).

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    This document describes CTD data collected on three cruises undertaken within the Dogger Bay Bank between August and November 2004, the RV Endeavour 12/04 (September 30 – October 10), 13/04 (August 31 – September 04) and 14/04 (October 22 – November 01). Ship-deployed CTDs were used to collect data at stations throughout each of the cruises. The cruises formed the research component of CEFAS project A1225 – North Sea Dogger Bank. This project is aimed at achieving a better understanding of the dynamics of the circulation processes of the seas around the UK, in order to characterise the extent and nature of density driven and seasonal jet-like circulation which acts as a direct and rapid pathway for transport of material. This project was conducted by the Centre for Environment, Fisheries and Aquaculture Science (CEFAS), Lowestoft Laboratory, led by Dr. Stephen Dye. The CTD data have been received by BODC as raw files from the RV Endeavour, processed and quality controlled using in-house BODC procedures and are available online to download from the BODC website.

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    The data set includes Sea Rover undulating oceanographic recorder data, including temperature, salinity and chlorophyll profiles. The data were collected in the North Atlantic during the 1980s. Data collection was undertaken along numerous sections between 1981 and 1987, as follows: 1981 - 5 sections and polar front box survey; 1983 - 5 sections and polar front box survey; 1984 - 6 sections; 1985 - 3 sections; 1986 - 4 sections; 1987 - 2 sections. The sections vary in length between 500 and 1000 miles and the data includes a number of repeated traverses between the Azores and the Ocean Weather Ship at Station 'Charlie'. The data were collected by the Institut fur Meereskunde, Kiel and have been assembled by the British Oceanographic Data Centre.

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    A dataset collected by investigators of the University of East Anglia during January - February 2020 in the tropical North Atlantic. Gliders SG620 and SG637 were deployed from the RV Meteor during cruise M161 as part of the EUREC4A oberservational campaign. Glider SG579 was deployed by the autonomous surface vehicle Caravela. All gliders were recovered by the Meteor. SG620 and SG637 occupied a bowtie pattern 10 km across centered at 14'10''N 57'20''W. The two gliders were deployed with CT sails measuring conductivity and temperature and completed 131 and 155 dives respectively. SG579 was deployed at 13'21''N 58'50''W and travelled 200 km to the bowtie over 10 days conducting 75 dives. Once onsite, SG579 conducted a further 220 dives. In addition to a CT sail, SG579 carried a PAR sensor and Wetlabs sensor measuring backscatter, chlorophyll a and CDOM. Data were processed using the UEA Seaglider Toolbox.

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    The 'End of the Pier' Menai Strait data set is a collection of biogeochemical and physical parameters (including temperature, salinity, transmittance and attenuation of the water column) measured in the Menai Strait since 1955.The aim is to concatenate data both historical and current, preventing the loss of valuable information and creating a time series for a variety of parameters in a unique environment. Data have been extracted from Ph.D. and M.Sc. theses undertaken at the School of Ocean Sciences (SOS) at Bangor University, in addition to published sources. In all cases data has undergone a very thorough quality audit and sufficient detail is provided so that the original source may be located. Data collection is ongoing but the British Oceanographic Data Centre (BODC) only holds data up to 2003.

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    This collection comprises physical measurements of the water column and surface waters, together with supporting discrete chemical and biological datasets. The data were obtained from the Irish Sea and in the sea off western Scotland over 4 periods: 17 and 23 August 2011 and 06 - 07 March 2012, all collected on Seiont IV cruises and 15 - 22 June 2012 obtained using the RV Prince Madog. These datasets and their collection methods are as follows: 1) LISST particle size data - A LISST 100X type C laser diffraction instrument was lowered in a frame from the ship and the depth-averaged volumes of particles in 32 size classes in a water column from the surface to a depth of 10 m (or the bottom, where shallower) were measured. 2) CTD profiles of conductivity, temperature, sigma-theta and salinity. At each station, a CTD with attached rosette was lowered, with data measurements taken. 3) SPM, mineral SPM, chlorophyll and CDOM water sample data. At each station a surface water sample was collected either in a bucket or in a rosette sampler on the CTD and triplicate sub-samples were filtered and subsequently dried and weighed, baked (at 500°C for 3 hours to remove organic material) and weighed again. 4) CDOM discrete samples taken from CTD and underway. Surface water samples collected at each station were filtered through 0.2 μm filters and the spectral variation of the absorption coefficient of the dissolved material in the filtrate was measured in a 10 cm cell in a Shimadzu 1600 dual-beam spectrophotometer, using distilled water as a reference.. 5) Water column inherent optical property profiles. Measurements of beam attenuation were made using a Sea Tech T1000 transmissometer (20cm pathlength) fixed to the CTD on the RV Prince Madog. At some stations, vertical profiles of downwelling irradiance and upwelling radiance were made with a PRR radiometer. These cruises formed the fieldwork component of the NERC-funded project “Measurement of the abundance and optical significance of sub-micron sized particles in the ocean”. The project aimed to use different magnifications and commercially available in-situ particle sizing instruments to create a package of instruments for measuring the undisturbed particle size distributions from 0.2 μm to 1 mm. This package will first be used in a turbulence tank to 'film' the flocculation process. The insight this gives will be used to construct new theoretical models of the particle size distribution. Because the camera also measures the shape of the particles, differences between observed and calculated optical properties can be compared, for the first time, to particle shape. Finally, the complete dataset will be collated to determine what size particles, under what conditions, are primarily responsible for the signals seen in visible band satellite images of the oceans. The NERC-funded project was held under lead grant reference NE/H022090/1 with child grants NE/H020853/1 and NE/H021493/1. The lead grant was held at Bangor University, School of Ocean Sciences by Professor David Bowers and ran from 01 April 2011 to 31 March 2014. Grant NE/H020853/1 was held at the University of Plymouth, School of Marine Science and Engineering by Dr. William Alexander Nimmo Smith and ran from 01 October 2010 to 30 September 2013. Finally, grant NE/H021493/1 was held at the University of Strathclyde Physics Department by Dr. David McKee and ran from 01 April 2011 to 31 March 2014. All data have been received by BODC as raw files from the RV Prince Madog and Seiont IV, processed and quality controlled using in-house BODC procedures.

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    This dataset consists of near real-time ocean observations from an autonomous underwater glider, sampling at the Joint North Sea Information System (JONSIS) hydrographic section (2.23°W to 0° at 59.28°N) between 12th October and 2nd December 2013. The measurements were made by a Seaglider (serial number 502) and consist of full-depth temperature, salinity, oxygen, chlorophyll and optical backscatter observations. Dive-average current observations were also collected. This dataset contains standard raw NetCDF (.nc), engineering (.eng) and log (.log) files captured using Seaglider base station version V2.05. The glider deployment was a collaborative effort between the University of East Anglia (UEA) and Marine Scotland Science. Deployment took place from Research Ship MRV Scotia, whilst recovery utilised MPV Jura. The JONSIS repeat section crosses the path of the Fair Isle Current and the East Shetland Atlantic Inflows, key routes by which Atlantic water enters the northern North Sea.

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    The MASSMO 5 dataset includes the near real time transmitted EGO (Everyone’s Gliding Observatories) NetCDF versions of glider data collected by five submarine gliders across three deployment campaigns. Recovery versions of data downloaded from the all gliders with no quality assurance are also available on request. Glider sensor suites included CTD, bio-optics, and oxygen optodes. Parameters observed include, temperature, salinity, chlorophyll fluorescence, optical backscatter, and oxygen data. The MASSMO 5a mission focused on the period 23 Jun 2018 to 06 Jul 2018 and included three submarine glider deployments (UK glider deployments only are included in this dataset). All assets were deployed from NRV Alliance in partnership with NATO-CMRE, but were recovered prematurely due to vessel technical issues. The primary geographic focus of MASSMO 5 was the outer shelf and upper slope off northern Norway, in the region between Bear Island and southern Spitsbergen, but outside the 12 mile territorial limits of these islands. The MASSMO 5b mission occurred within the period 17-24 Oct 2018, a total of three ocean gliders were deployed. The primary geographic focus of MASSMO5b was the northern North Sea to the east of the Orkney archipelago. The MASSMO 5c mission was aborted and no data were collected. The MASSMO 5d mission occurred within period 26 Apr 2019 to 6 May 2019, there was deployment of a single ocean glider. The primary geographic focus of MASSMO 5d was the Faroe Shetland Channel. MASSMO 5 was co-ordinated by the National Oceanography Centre (NOC) in partnership with University of East Anglia (UEA), Plymouth Marine Laboratory (PML) and Scottish Association for Marine Science (SAMS). The mission was sponsored by Defence Science and Technology Laboratory (DSTL) and involved close co-operation with the NATO Centre for Maritime Research and Experimentation (CMRE) and UK Royal Navy, and was supported by several additional commercial, government and research partners.